ChEBI: Difference between revisions

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|format =
|url = [http://www.ebi.ac.uk/chebi/ ChEBI]
|pmid = <ref name=pmid19854951>{{cite journal |pmid=19854951}}</ref>
|pmid = [http://www.ncbi.nlm.nih.gov/pubmed/19854951 PMID:19854951]
|download = [ftp://ftp.ebi.ac.uk/pub/databases/chebi/ Downloads]
|webservice = [http://www.ebi.ac.uk/chebi/webServices.do Web Service]
}}
 
|'''Chemical Entities of urlBiological Interest''', also known as '''ChEBI''',<ref name=http:pmid19854951//www.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom><ref name=pubmed&tool=clinical.uthscsa.edu/pmid17932057>{{cite&retmode=ref&cmd=prlinks&id=17932057 | doi=10.1093/nar/gkm791journal | pmcpmid=2238832 17932057}}</ref> is a database and [[Ontology (information science)|ontology]] of [[molecular entity|molecular entities]] focused on 'small' chemical compounds, that is part of the [[Open Biomedical Ontologies]] effort. The term "molecular entity" refers to any "constitutionally or isotopically distinct [[atom]], [[molecule]], [[ion]], [[ion pair]], [[Radical (chemistry)|radical]], [[radical ion]], [[complex (chemistry)|complex]], [[conformer]], etc., identifiable as a separately distinguishable entity".<ref>{{GoldBookRef|title=molecular entity|file=M03986}}</ref> The molecular entities in question are either products of nature or synthetic products used to intervene in the processes of living organisms. Molecules directly encoded by the genome, such as [[nucleic acids]], [[proteins]] and [[peptides]] derived from proteins by [[proteolytic]] cleavage, are not as a rule included in ChEBI.
'''Chemical Entities of Biological Interest''', also known as '''ChEBI''',<ref name="pmid19854951">{{cite journal| author=de Matos P, Alcántara R, Dekker A, Ennis M, Hastings J, Haug K et al.| title=Chemical Entities of Biological Interest: an update. | journal=Nucleic Acids Res | year= 2010 | volume= 38 | issue= Database issue | pages= D249-54 | pmid=19854951
| url=http://www.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&tool=clinical.uthscsa.edu/cite&retmode=ref&cmd=prlinks&id=19854951 | doi=10.1093/nar/gkp886 | pmc=2808869 }}</ref><ref name="pmid17932057">{{cite journal| author=Degtyarenko K, de Matos P, Ennis M, Hastings J, Zbinden M, McNaught A et al.| title=ChEBI: a database and ontology for chemical entities of biological interest. | journal=Nucleic Acids Res | year= 2008 | volume= 36 | issue= Database issue | pages= D344-50 | pmid=17932057
| url=http://www.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pubmed&tool=clinical.uthscsa.edu/cite&retmode=ref&cmd=prlinks&id=17932057 | doi=10.1093/nar/gkm791 | pmc=2238832 }}</ref> is a database and [[Ontology (information science)|ontology]] of [[molecular entity|molecular entities]] focused on 'small' chemical compounds, that is part of the [[Open Biomedical Ontologies]] effort. The term "molecular entity" refers to any "constitutionally or isotopically distinct [[atom]], [[molecule]], [[ion]], [[ion pair]], [[Radical (chemistry)|radical]], [[radical ion]], [[complex (chemistry)|complex]], [[conformer]], etc., identifiable as a separately distinguishable entity".<ref>{{GoldBookRef|title=molecular entity|file=M03986}}</ref> The molecular entities in question are either products of nature or synthetic products used to intervene in the processes of living organisms. Molecules directly encoded by the genome, such as [[nucleic acids]], [[proteins]] and [[peptides]] derived from proteins by [[proteolytic]] cleavage, are not as a rule included in ChEBI.
 
ChEBI uses [[IUPAC nomenclature|nomenclature]], symbolism and terminology endorsed by the [[IUPAC|International Union of Pure and Applied Chemistry]] (IUPAC) and Nomenclature Committee of the [[International Union of Biochemistry and Molecular Biology]] (NC-IUBMB).
 
ChEBI is available at http://www.ebi.ac.uk/chebi/, and for download by anonymous FTP (ftp://ftp.ebi.ac.uk/pub/databases/chebi/).
 
==Scope and Access==
 
==References==
{{reflist}}
<references/>
 
==External links==
*http://www.ebi.ac.uk/chebi/
*ftp://ftp.ebi.ac.uk/pub/databases/chebi/
 
{{DEFAULTSORT:Chebi}}